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Deducing genotypes for loci of interest from SNP array data via haplotype sharing, demonstrated for apple and cherry.

PloS one - 1 Jan 2023

Schaller Alexander, Vanderzande Stijn, Peace Cameron

Abstract excerpt

Breeders, collection curators, and other germplasm users require genetic information, both genome-wide and locus-specific, to effectively manage their genetically diverse plant material. SNP arrays have become the preferred platform to provide genome-wide genetic profiles for elite germplasm and could also provide locus-specific genotypic information. However, genotypic information for loci of interest such as...

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PMID: 36749762
DOI: 10.1371/journal.pone.0272888
PMCID: PMC9904487

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