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Sequencing of SARS-CoV-2 in local transmission cases through Oxford Nanopore MinION platform from Karachi Pakistan.

Journal of infection in developing countries - 31 Oct 2021

Mukry Samina Naz, Ahmed Shariq, Raza Bukhari Ali, Shahni Aneeta, Sufaida Gul, Naz Arshi, Shamsi Tahir Sultan

Abstract excerpt

INTRODUCTION: The first case of severe acute respiratory syndrome 2 (SARS-CoV-2) was imported to Pakistan in February 2020, since then 8,260 deaths have been witnessed. The virus has been constantly mutating and local transmission cases from different countries vary due to host dependent viral adaptation. Many distinct clusters of variant SARS-CoV-2 have been defined globally. In this study, the epidemiology of...

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COVID-19
Genome, Viral
Nanopores
Nasopharynx
Pakistan

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Whole Genome Sequencing

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PMID: 34780358
DOI: 10.3855/jidc.14900

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