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Article

An integrated strategy for target SSR genotyping with toleration of nucleotide variations in the SSRs and flanking regions.

BMC bioinformatics - 8 Sept 2021

Huo Yongxue, Zhao Yikun, Xu Liwen, Yi Hongmei, Zhang Yunlong, Jia Xianqing, Zhao Han, Zhao Jiuran, Wang Fengge

Abstract excerpt

BACKGROUND: With the broad application of high-throughput sequencing and its reduced cost, simple sequence repeat (SSR) genotyping by sequencing (SSR-GBS) has been widely used for interpreting genetic data across different fields, including population genetic diversity and structure analysis, the construction of genetic maps, and the investigation of intraspecies relationships. The development of accurate and...

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PMID: 34496768
DOI: 10.1186/s12859-021-04351-w
PMCID: PMC8424866

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