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Article

High density genotype storage for plant breeding in the Chado schema of Breedbase.

PloS one - 1 Jan 2020

Morales Nicolas, Bauchet Guillaume J, Tantikanjana Titima, Powell Adrian F, Ellerbrock Bryan J, Tecle Isaak Y, Mueller Lukas A

Abstract excerpt

Modern breeding programs routinely use genome-wide information for selecting individuals to advance. The large volumes of genotypic information required present a challenge for data storage and query efficiency. Major use cases require genotyping data to be linked with trait phenotyping data. In contrast to phenotyping data that are often stored in relational database schemas, next-generation genotyping data are...

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PMID: 33175872
DOI: 10.1371/journal.pone.0240059
PMCID: PMC7657515

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