Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Deciphering the SSR incidences across viral members of Coronaviridae family.

Chemico-biological interactions - 1 Nov 2020

Satyam Rohit, Jha Niraj Kumar, Kar Rohan, Jha Saurabh Kumar, Sharma Ankur, Kumar Dhruv, Nand Parma, Ruokolainen Janne, Kesari Kavindra Kumar, Kamal Mohammad Amjad

Abstract excerpt

Presence of Simple Sequence Repeats (SSRs), both in genic and intergenic regions, have been widely studied in eukaryotes, prokaryotes, and viruses. In the current study, we undertook a survey to analyze the frequency and distribution of microsatellites or SSRs in multiple genomes of Coronaviridae members. We successfully identified 919 SSRs with length ≥12 bp across 55 reference genomes majority of which...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to 3' Untranslated Regions
Share to Base Composition

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Betacoronavirus

Share to Genome, Viral

Share to Microsatellite Repeats

Share to Polyproteins

Share to SARS-CoV-2

Share to Viral Proteins

Source

Open in PubMed Open full text

Identifiers

PMID: 32971122
DOI: 10.1016/j.cbi.2020.109226
PMCID: PMC7505113

Genes

GC

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Deciphering the SSR incidences across viral members of Coronaviridae family.PMID 32971122Read ↗

Genome-wide scan for analysis of simple and imperfect microsatellites in diverse carlaviruses.Semantic proximity Read ↗

In-Silico Assessment of Implications of Simple Sequence Repeats Signature in 98 Genomes of PolyomaviridaeSemantic proximity Read ↗

Identification and analysis of microsatellites in CoronaviridaeSemantic proximity Read ↗

Differential distributions of mononucleotide repeat sequences in 256 viral genomes and its potential implications.Semantic proximity Read ↗

Comparative analysis, distribution, and characterization of microsatellites in Orf virus genome.Semantic proximity Read ↗

SSRD: simple sequence repeats database of the human genome.Semantic proximity Read ↗

Genome microsatellite diversity within the Apicomplexa phylum.Semantic proximity Read ↗

Differential distribution and occurrence of simple sequence repeats in diverse geminivirus genomes.Semantic proximity Read ↗

Genome-wide mining and comparative analysis of microsatellites in three macaque species.Semantic proximity Read ↗

Comparative genome analysis reveals insights into the driving forces behind Monkeypox virus evolution and sheds light on the active role of trinucleotide motif ATCSemantic proximity Read ↗

Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review.Semantic proximity Read ↗

RepeatAnalyzer: a tool for analysing and managing short-sequence repeat data.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.