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Genome sequence and analysis of a Japanese radish (Raphanus sativus) cultivar named 'Sakurajima Daikon' possessing giant root.

DNA research : an international journal for rapid publication of reports on genes and genomes - 1 Apr 2020

Shirasawa Kenta, Hirakawa Hideki, Fukino Nobuko, Kitashiba Hiroyasu, Isobe Sachiko

Abstract excerpt

AIM: The complex genome of a Japanese radish (Raphanus sativus) cultivar named 'Okute-Sakurajima' with an extremely large edible round root was analysed to explore its genomic characteristics. METHODS AND RESULTS: Single-molecule real-time technology was used to obtain long sequence reads to cover 60× of the genome. De novo assembly generated 504.5 Mb contigs consisting of 1,437 sequences with the N50 value of...

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Chromosomes, Plant
Genome, Plant
Molecular Sequence Annotation
Plant Roots
Polymorphism, Single Nucleotide

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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PMID: 32426809
DOI: 10.1093/dnares/dsaa010
PMCID: PMC7334891

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