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Article

Improving Prediction Accuracy Using Multi-allelic Haplotype Prediction and Training Population Optimization in Wheat.

G3 (Bethesda, Md.) - 7 Jul 2020

Sallam Ahmad H, Conley Emily, Prakapenka Dzianis, Da Yang, Anderson James A

Abstract excerpt

The use of haplotypes may improve the accuracy of genomic prediction over single SNPs because haplotypes can better capture linkage disequilibrium and genomic similarity in different lines and may capture local high-order allelic interactions. Additionally, prediction accuracy could be improved by portraying population structure in the calibration set. A set of 383 advanced lines and cultivars that represent the...

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PMID: 32371453
DOI: 10.1534/g3.120.401165
PMCID: PMC7341132

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