Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Distinguishing successive ancient polyploidy levels based on genome-internal syntenic alignment.

BMC bioinformatics - 17 Dec 2019

Zhang Yue, Zheng Chunfang, Sankoff David

Abstract excerpt

BACKGROUND: A basic tool for studying the polyploidization history of a genome, especially in plants, is the distribution of duplicate gene similarities in syntenically aligned regions of a genome. This distribution can usually be decomposed into two or more components identifiable by peaks, or local maxima, each representing a different polyploidization event. The distributions may be generated by means of a...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Brassicaceae
Share to Genes, Plant
Share to Genome, Plant

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Models, Genetic

Share to Mutation

Share to Polyploidy

Share to Populus

Share to Synteny

Source

Open in PubMed Open full text

Identifiers

PMID: 31842736
DOI: 10.1186/s12859-019-3202-x
PMCID: PMC6915858

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 3 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Distinguishing successive ancient polyploidy levels based on genome-internal syntenic alignment.PMID 31842736Read ↗

Reconstructing the origins and the biogeography of species' genomes in the highly reticulate allopolyploid-rich model grass genus Brachypodium using minimum evolution, coalescence and maximum likelihood approaches.Semantic proximity Read ↗

Polyploids, genome halving and phylogeny.Semantic proximity Read ↗

The polyploid continuum and the landscape of polyploid genomic variation.Semantic proximity Read ↗

Polyploidy in the Arabidopsis genus.Semantic proximity Read ↗

RNA-seq in grain unveils fate of neo- and paleopolyploidization events in bread wheat (Triticum aestivum L.).Semantic proximity Read ↗

Single Geographic Origin of a Widespread Autotetraploid Arabidopsis arenosa Lineage Followed by Interploidy Admixture.Semantic proximity Read ↗

Polyploids increase overall diversity despite higher turnover than diploids in the Brassicaceae.Semantic proximity Read ↗

Next-generation sequencing and genome evolution in allopolyploids.Semantic proximity Read ↗

Evolution of triploidy in Apios americana (Leguminosae) revealed by genealogical analysis of the histone H3-D gene.Semantic proximity Read ↗

Next-generation polyploid phylogenetics: rapid resolution of hybrid polyploid complexes using PacBio single-molecule sequencing.Semantic proximity Read ↗

Genetic and epigenetic aspects of polyploid evolution in plants.Semantic proximity Read ↗

Evolutionary consequences, constraints and potential of polyploidy in plants.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.