A mosaic monoploid reference sequence for the highly complex genome of sugarcane.

doi:10.1038/s41467-018-05051-5

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Article

A mosaic monoploid reference sequence for the highly complex genome of sugarcane.

Nature communications - 6 Jul 2018

Garsmeur Olivier, Droc Gaetan, Antonise Rudie, Grimwood Jane, Potier Bernard, Aitken Karen, Jenkins Jerry, Martin Guillaume, Charron Carine, Hervouet Catherine, Costet Laurent, Yahiaoui Nabila, Healey Adam, Sims David, Cherukuri Yesesri, Sreedasyam Avinash, Kilian Andrzej, Chan Agnes, Van Sluys Marie-Anne, Swaminathan Kankshita, Town Christopher, Bergès Hélène, Simmons Blake, Glaszmann Jean Christophe, van der Vossen Edwin, Henry Robert, Schmutz Jeremy, D'Hont Angélique

Abstract excerpt

Sugarcane (Saccharum spp.) is a major crop for sugar and bioenergy production. Its highly polyploid, aneuploid, heterozygous, and interspecific genome poses major challenges for producing a reference sequence. We exploited colinearity with sorghum to produce a BAC-based monoploid genome sequence of sugarcane. A minimum tiling path of 4660 sugarcane BAC that best covers the gene-rich part of the sorghum genome was...

Topics

Base Sequence
Chromosomes, Artificial, Bacterial
Chromosomes, Plant
DNA Transposable Elements
Gene Amplification
Genome, Plant
Genomic Structural Variation

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Models, Genetic

Mosaicism

Ploidies

Polymorphism, Single Nucleotide

Saccharum

Sequence Analysis, DNA

Sorghum

Source

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Identifiers

PMID: 29980662
DOI: 10.1038/s41467-018-05051-5
PMCID: PMC6035169

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