Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Variant Effect Prediction Analysis Using Resources Available at Gramene Database.

Methods in molecular biology (Clifton, N.J.) - 1 Jan 2017

Naithani Sushma, Geniza Matthew, Jaiswal Pankaj

Abstract excerpt

The goal of Gramene database ( www.gramene.org ) is to empower the plant research community in conducting comparative genomics studies across model plants and crops by employing a phylogenetic framework and orthology-based projections. Gramene database (release #49) provides resources for comparative plant genomics including well-annotated plant genomes (39 complete reference genomes and six partial genomes),...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Computational Biology
Share to Crops, Agricultural
Share to Databases, Genetic

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genomics

Share to Plants

Share to Software

Share to User-Computer Interface

Share to Web Browser

Source

Identifiers

PMID: 27987178
DOI: 10.1007/978-1-4939-6658-5_17

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 6 Sept 2026. Manifest publication-graph-cohort-2026-09-06.1.

Source receipt: pubmed, retrieved 6 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Variant Effect Prediction Analysis Using Resources Available at Gramene Database.PMID 27987178Read ↗

Gramene 2013: comparative plant genomics resources.Semantic proximity Read ↗

Gramene database in 2010: updates and extensions.Semantic proximity Read ↗

Gramene: a growing plant comparative genomics resource.Semantic proximity Read ↗

Gramene 2025: expanded comparative genomics and pathway resources, integrated search, and pan-genome portals for crop research.Semantic proximity Read ↗

Gramene 2016: comparative plant genomics and pathway resources.Semantic proximity Read ↗

Gramene, a tool for grass genomics.Semantic proximity Read ↗

Gramene 2018: unifying comparative genomics and pathway resources for plant research.Semantic proximity Read ↗

GrameneOryza: a comprehensive resource for Oryza genomes, genetic variation, and functional data.Semantic proximity Read ↗

A SNP-based consensus genetic map for synteny-based trait targeting in faba bean (Vicia faba L.).Semantic proximity Read ↗

Validation of an updated Associative Transcriptomics platform for the polyploid crop species Brassica napus by dissection of the genetic architecture of erucic acid and tocopherol isoform variation in seeds.Semantic proximity Read ↗

Crop-GPA: an integrated platform of crop gene-phenotype associations.Semantic proximity Read ↗

A unified VCF dataset from nearly 1,500 diverse maize accessions and resources to explore the genomic landscape of maize.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.