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Genome wide characterization of simple sequence repeats in watermelon genome and their application in comparative mapping and genetic diversity analysis.

BMC genomics - 5 Aug 2016

Zhu Huayu, Song Pengyao, Koo Dal-Hoe, Guo Luqin, Li Yanman, Sun Shouru, Weng Yiqun, Yang Luming

Abstract excerpt

BACKGROUND: Microsatellite markers are one of the most informative and versatile DNA-based markers used in plant genetic research, but their development has traditionally been difficult and costly. The whole genome sequencing with next-generation sequencing (NGS) technologies provides large amounts of sequence data to develop numerous microsatellite markers at whole genome scale. SSR markers have great advantage...

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PMID: 27495254
DOI: 10.1186/s12864-016-2870-4
PMCID: PMC4974753

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