Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Genome-wide transcriptome profiles of rice hybrids and their parents.

International journal of molecular sciences - 13 Nov 2014

E Zhiguo, Huang Shanshan, Zhang Yuping, Ge Lei, Wang Lei

Abstract excerpt

Heterosis is a widely studied phenomenon in several plant species. However, its genetic basis still remains to be elucidated. In this study, we used RNA-seq data from two rice genotypes and their reciprocal hybrids, and used a combination of transcriptome profiling and allele-specific expression analysis to identify genes that are differentially expressed in the hybrids and their parents or expressed in an...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Chimera
Share to Gene Expression Profiling
Share to Gene Expression Regulation, Plant

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Share to Genome, Plant

Share to Plant Proteins

Share to Transcription Factors

Share to Transcriptome

Source

Open in PubMed Open full text

Identifiers

PMID: 25402644
DOI: 10.3390/ijms151120833
PMCID: PMC4264198

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence. Graph snapshot: 2026-09-29.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Genome-wide transcriptome profiles of rice hybrids and their parents.PMID 25402644Read ↗

Global RNA sequencing reveals that genotype-dependent allele-specific expression contributes to differential expression in rice F1 hybrids.Semantic proximity Read ↗

Identification of transcriptome SNPs for assessing allele-specific gene expression in a super-hybrid rice Xieyou9308.Semantic proximity Read ↗

Phasing analysis of the transcriptome and epigenome in a rice hybrid reveals the inheritance and difference in DNA methylation and allelic transcription regulation.Semantic proximity Read ↗

Beyond parental lines: multi-omics analyses reveal epigenetic and transcriptional mechanisms underlying heterosis in Oryza sativa × Oryza rufipogon hybrids.Semantic proximity Read ↗

Heterosis and polymorphisms of gene expression in an elite rice hybrid as revealed by a microarray analysis of 9198 unique ESTs.Semantic proximity Read ↗

Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids.Semantic proximity Read ↗

Genome-wide analysis of cis-regulatory divergence between species in the Arabidopsis genus.Semantic proximity Read ↗

Parental variation in CHG methylation is associated with allelic-specific expression in elite hybrid rice.Semantic proximity Read ↗

Global epigenomic analysis indicates that epialleles contribute to Allele-specific expression via Allele-specific histone modifications in hybrid rice.Semantic proximity Read ↗

Hybrid weakness in a rice interspecific hybrid is nitrogen-dependent, and accompanied by changes in gene expression at both total transcript level and parental allele partitioning.Semantic proximity Read ↗

Transcriptome and DNA methylome analyses provide insight into the heterosis in flag leaf of inter-subspecific hybrid rice.Semantic proximity Read ↗

GOLDEN2-LIKE1 participates in transcriptional network regulation in indica-japonica subspecific hybrid rice.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.