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Article

Nucleotide polymorphism and copy number variant detection using exome capture and next-generation sequencing in the polyploid grass Panicum virgatum.

The Plant journal : for cell and molecular biology - 1 Sept 2014

Evans Joseph, Kim Jeongwoon, Childs Kevin L, Vaillancourt Brieanne, Crisovan Emily, Nandety Aruna, Gerhardt Daniel J, Richmond Todd A, Jeddeloh Jeffrey A, Kaeppler Shawn M, Casler Michael D, Buell C Robin

Abstract excerpt

Switchgrass (Panicum virgatum) is a polyploid, outcrossing grass species native to North America and has recently been recognized as a potential biofuel feedstock crop. Significant phenotypic variation including ploidy is present across the two primary ecotypes of switchgrass, referred to as upland and lowland switchgrass. The tetraploid switchgrass genome is approximately 1400 Mbp, split between two subgenomes,...

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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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Identifiers

PMID: 24947485
DOI: 10.1111/tpj.12601
PMCID: PMC4309430

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