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Comparison of SSR and SNP markers in estimation of genetic diversity and population structure of Indian rice varieties.

PloS one - 1 Jan 2013

Singh Nivedita, Choudhury Debjani Roy, Singh Amit Kumar, Kumar Sundeep, Srinivasan Kalyani, Tyagi R K, Singh N K, Singh Rakesh

Abstract excerpt

Simple sequence repeat (SSR) and Single Nucleotide Polymorphic (SNP), the two most robust markers for identifying rice varieties were compared for assessment of genetic diversity and population structure. Total 375 varieties of rice from various regions of India archived at the Indian National GeneBank, NBPGR, New Delhi, were analyzed using thirty six genetic markers, each of hypervariable SSR (HvSSR) and SNP...

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Genetic Markers
India
Microsatellite Repeats
Oryza
Phylogeny

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Polymorphism, Single Nucleotide

Population Dynamics

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PMID: 24367635
DOI: 10.1371/journal.pone.0084136
PMCID: PMC3868579

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