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Article

Massive sorghum collection genotyped with SSR markers to enhance use of global genetic resources.

PloS one - 1 Jan 2013

Billot Claire, Ramu Punna, Bouchet Sophie, Chantereau Jacques, Deu Monique, Gardes Laetitia, Noyer Jean-Louis, Rami Jean-François, Rivallan Ronan, Li Yu, Lu Ping, Wang Tianyu, Folkertsma Rolf T, Arnaud Elizabeth, Upadhyaya Hari D, Glaszmann Jean-Christophe, Hash C Thomas

Abstract excerpt

Large ex situ collections require approaches for sampling manageable amounts of germplasm for in-depth characterization and use. We present here a large diversity survey in sorghum with 3367 accessions and 41 reference nuclear SSR markers. Of 19 alleles on average per locus, the largest numbers of alleles were concentrated in central and eastern Africa. Cultivated sorghum appeared structured according to...

Topics

Alleles
Bayes Theorem
Computational Biology
DNA, Plant
Genetic Loci
Genetic Variation
Genomics
Genotype
Microsatellite Repeats
Phylogeny

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Phylogeography

Polymorphism, Genetic

Sorghum

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Open in PubMed Open full text

Identifiers

PMID: 23565161
DOI: 10.1371/journal.pone.0059714
PMCID: PMC3614975

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