Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Core Hunter II: fast core subset selection based on multiple genetic diversity measures using Mixed Replica search.

BMC bioinformatics - 23 Nov 2012

De Beukelaer Herman, Smýkal Petr, Davenport Guy F, Fack Veerle

Abstract excerpt

BACKGROUND: Sampling core subsets from genetic resources while maintaining as much as possible the genetic diversity of the original collection is an important but computationally complex task for gene bank managers. The Core Hunter computer program was developed as a tool to generate such subsets based on multiple genetic measures, including both distance measures and allelic diversity indices. At first we...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Algorithms
Share to Alleles
Share to Genetic Variation

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Monte Carlo Method

Share to Sequence Analysis, DNA

Share to Software

Source

Open in PubMed Open full text

Identifiers

PMID: 23174036
DOI: 10.1186/1471-2105-13-312
PMCID: PMC3554476

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 4 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Core Hunter II: fast core subset selection based on multiple genetic diversity measures using Mixed Replica search.PMID 23174036Read ↗

Core Hunter: an algorithm for sampling genetic resources based on multiple genetic measures.Semantic proximity Read ↗

Core Hunter 3: flexible core subset selection.Semantic proximity Read ↗

Quality of core collections for effective utilisation of genetic resources review, discussion and interpretation.Semantic proximity Read ↗

Transformer-4 version 2.0.1, a free multi-platform software to quickly reformat genotype matrices of any marker type, and archive them in the Demiurge information system.Semantic proximity Read ↗

ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data.Semantic proximity Read ↗

Methods for the Construction of Core Collections Using SNP Markers.Semantic proximity Read ↗

Extracting samples of high diversity from thematic collections of large gene banks using a genetic-distance based approach.Semantic proximity Read ↗

The impact of sample selection strategies on genetic diversity and representativeness in germplasm bank collections.Semantic proximity Read ↗

Development of a core set from a large rice collection using a modified heuristic algorithm to retain maximum diversity.Semantic proximity Read ↗

An informational view of accession rarity and allele specificity in germplasm banks for management and conservation.Semantic proximity Read ↗

MSTRAT: an algorithm for building germ plasm core collections by maximizing allelic or phenotypic richness.Semantic proximity Read ↗

Retention of agronomically important variation in germplasm core collections: implications for allele mining.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.