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GiA Roots: software for the high throughput analysis of plant root system architecture.

BMC plant biology - 26 Jul 2012

Galkovskyi Taras, Mileyko Yuriy, Bucksch Alexander, Moore Brad, Symonova Olga, Price Charles A, Topp Christopher N, Iyer-Pascuzzi Anjali S, Zurek Paul R, Fang Suqin, Harer John, Benfey Philip N, Weitz Joshua S

Abstract excerpt

BACKGROUND: Characterizing root system architecture (RSA) is essential to understanding the development and function of vascular plants. Identifying RSA-associated genes also represents an underexplored opportunity for crop improvement. Software tools are needed to accelerate the pace at which quantitative traits of RSA are estimated from images of root networks. RESULTS: We have developed GiA Roots (General...

Topics

Algorithms
Electronic Data Processing
Genotype
Image Processing, Computer-Assisted
Oryza
Phenotype
Plant Roots
Reproducibility of Results
Software
User-Computer Interface

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PMID: 22834569
DOI: 10.1186/1471-2229-12-116
PMCID: PMC3444351

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