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Article

A genome-wide comparison of NB-LRR type of resistance gene analogs (RGA) in the plant kingdom.

Molecules and cells - 1 Apr 2012

Kim Jungeun, Lim Chan Ju, Lee Bong-Woo, Choi Jae-Pil, Oh Sang-Keun, Ahmad Raza, Kwon Suk-Yoon, Ahn Jisook, Hur Cheol-Goo

Abstract excerpt

Plants express resistance (R) genes to recognize invaders and prevent the spread of pathogens. To analyze nucleotide binding site, leucine-rich repeat (NB-LRR) genes, we constructed a fast pipeline to predict and classify the R gene analogs (RGAs) by applying in-house matrices. With predicted ~37,000 RGAs, we can directly compare RGA contents across entire plant lineages, from green algae to flowering plants. We...

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Identifiers

PMID: 22453776
DOI: 10.1007/s10059-012-0003-8
PMCID: PMC3887800

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