Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

FunctSNP: an R package to link SNPs to functional knowledge and dbAutoMaker: a suite of Perl scripts to build SNP databases.

BMC bioinformatics - 9 Jun 2010

Goodswen Stephen J, Gondro Cedric, Watson-Haigh Nathan S, Kadarmideen Haja N

Abstract excerpt

BACKGROUND: Whole genome association studies using highly dense single nucleotide polymorphisms (SNPs) are a set of methods to identify DNA markers associated with variation in a particular complex trait of interest. One of the main outcomes from these studies is a subset of statistically significant SNPs. Finding the potential biological functions of such SNPs can be an important step towards further use in...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Databases, Genetic
Share to Genetic Markers

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genomics

Share to Polymorphism, Single Nucleotide

Share to Software

Source

Open in PubMed Open full text

Identifiers

PMID: 20534127
DOI: 10.1186/1471-2105-11-311
PMCID: PMC2901372

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 6 Sept 2026. Manifest publication-graph-cohort-2026-09-06.1.

Source receipt: pubmed, retrieved 6 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

FunctSNP: an R package to link SNPs to functional knowledge and dbAutoMaker: a suite of Perl scripts to build SNP databases.PMID 20534127Read ↗

Snpdat: easy and rapid annotation of results from de novo snp discovery projects for model and non-model organisms.Semantic proximity Read ↗

De novo identification, differential analysis and functional annotation of SNPs from RNA-seq data in non-model speciesSemantic proximity Read ↗

pfSNP: An integrated potentially functional SNP resource that facilitates hypotheses generation through knowledge syntheses.Semantic proximity Read ↗

A web-based tool to retrieve human genome polymorphisms from public databases.Semantic proximity Read ↗

Functional single nucleotide polymorphism-based association studies.Semantic proximity Read ↗

New tools and methods for direct programmatic access to the dbSNP relational database.Semantic proximity Read ↗

snpXplorer: a web application to explore human SNP-associations and annotate SNP-sets.Semantic proximity Read ↗

A practical guide for the functional annotation of genetic variations using SNPnexus.Semantic proximity Read ↗

SNPnexus: a web database for functional annotation of newly discovered and public domain single nucleotide polymorphisms.Semantic proximity Read ↗

Annotation and assessment of functional variants in livestock through epigenomic data.Semantic proximity Read ↗

FarmGTEx TWAS-server: An Interactive Web Server for Customized TWAS Analysis.Semantic proximity Read ↗

Animal-SNPAtlas: a comprehensive SNP database for multiple animals.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.